Orchidstra 2.0 - A Transcriptomics Resource for the Orchid Family

P. aphrodite genome

Chao, Y.T., Chen, W.C., Chen, C.Y., Ho, H.Y., Yeh, C.H., Kuo, Y.T., Su, C.L., Yen, S.H., Hsueh, H.Y., Yeh, J.H., Hsu, H.L., Tsai, Y.H., Kuo, T.Y., Chang, S.B., Chen, K.Y. and Shih, M.C. (2018) Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding. Plant biotechnology journal 16, 2027-2041. doi:10.1111/pbi.12936 [Link]

Orchidstra 2.0 database

Ya-Ting Chao, Shao-Hua Yen, Jen-Hau Yeh, Wan-Chieh Chen, and Ming-Che Shih (2017) Orchidstra 2.0 - A Transcriptomics Resource for the Orchid Family. Plant Cell Physiol. 2017 Jan 22. pii: pcw220. doi: 10.1093/pcp/pcw220. [Link]

Orchid miRNA

Chao Y-T, Su C-L, Jean W-H, Chen W-C, Chang Y-C, Shih M-C (2014) Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite. Plant Mol Biol:1-20. doi:10.1007/s11103-013-0150-0. [Link]

Orchidstra database

Su CL, Chao YT, Yen SH, Chen CY, Chen WC, Chang YC, Shih MC (2013) Orchidstra: an integrated orchid functional genomics database. Plant & cell physiology 54 (2):e11. doi:10.1093/pcp/pct004. [Link]

Orchid Microarray

Su CL, Chen WC, Lee AY, Chen CY, Chang YC, Chao YT, Shih MC (2013) A Modified ABCDE Model of Flowering in Orchids Based on Gene Expression Profiling Studies of the Moth Orchid Phalaenopsis aphrodite. PloS one 8 (11):e80462. doi:10.1371/journal.pone.0080462. [Link]

Transcriptome analysis of P. aphrodite

Su CL, Chao YT, Alex Chang YC, Chen WC, Chen CY, Lee AY, Hwa KT, Shih MC (2011) De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome. Plant & cell physiology 52 (9):1501-1514. doi:10.1093/pcp/pcr097. [Link]