- P. aphrodite
- Lineage
- Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Liliopsida; Asparagales; Orchidaceae; Epidendroideae; higher Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
- Tissue
- Root, leaf, stalk, fully opened flower, large bud, small bud, pollinia, seed
- Technique/Data Source
- The dataset is generated by Illumia GAII, HiSeq2000, HiSeq2500 and Roche 454 platforms.
- The assembly coding sequences classified in the different categories
| BLAST Cutoff | Tentative Annotation | P. aphrodite Seq# |
|---|---|---|
| Identity ≥ 80% AND E_Value ≤ 1e-40 AND Coverage ≥ 80% | Homologue to Accession/Definition of Protein | 13989 |
| (E_Value ≤ 1e-40 AND (Identity < 80% OR Coverage < 80%)) OR 1e-40 < E_Value ≤ 1e-30 | Similar to Accession/Definition of Protein | 6075 |
| 1e-30 < E_Value ≤ 1e-5 | Weak similar to Accession/Definition of Protein | 8116 |
| Total | 28180 | |
- Reference
- Ya-Ting Chao, Shao-Hua Yen, Jen-Hau Yeh, Wan-Chieh Chen, and Ming-Che Shih (2017) Orchidstra 2.0 - A Transcriptomics Resource for the Orchid Family. Plant Cell Physiol. 2017 Jan 22. pii: pcw220. doi: 10.1093/pcp/pcw220.(http://www.ncbi.nlm.nih.gov/pubmed/?term=28111366)<br /> Chao Y-T, Su C-L, Jean W-H, Chen W-C, Chang Y-C, Shih M-C (2013) Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite. Plant Mol Biol:1-20. doi:10.1007/s11103-013-0150-0 (http://www.ncbi.nlm.nih.gov/pubmed/24173913)