- G. elata
- Lineage
- Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Asparagales; Orchidaceae; Epidendroideae; Gastrodieae; Gastrodia.
- Tissue
- Large bud, small bud
- Technique/Data Source
- The dataset is generated by Illumia HiSeq2500 with 200 * 200 paired end reads.
- The assembly coding sequences classified in the different categories
| BLAST Cutoff | Tentative Annotation | G. elata Seq# |
|---|---|---|
| Identity ≥ 80% AND E_Value ≤ 1e-40 AND Coverage ≥ 80% | Homologue to Accession/Definition of Protein | 4883 |
| (E_Value ≤ 1e-40 AND (Identity < 80% OR Coverage < 80%)) OR 1e-40 < E_Value ≤ 1e-30 | Similar to Accession/Definition of Protein | 13140 |
| 1e-30 < E_Value ≤ 1e-5 | Weak similar to Accession/Definition of Protein | 1460 |
| Total | 19483 | |
- Reference
- Ya-Ting Chao, Shao-Hua Yen, Jen-Hau Yeh, Wan-Chieh Chen, and Ming-Che Shih (2017) Orchidstra 2.0 - A Transcriptomics Resource for the Orchid Family. Plant Cell Physiol. 2017 Jan 22. pii: pcw220. doi: 10.1093/pcp/pcw220.(http://www.ncbi.nlm.nih.gov/pubmed/?term=28111366)